Advanced asymptotics of PDEs, modeling and extreme statistics and their applications to data analysis in cell biology

15 September 2018 - 3 November 2018

Timetable

Date	Time	Speaker	Room
Mon 22 Oct	8:30- 9:30	Registration	Aula Dini
	9:30- 10:15	Garini, Yuval "Chromatin matrix – possible nuclear functional structure"	Aula Dini
	10:15- 10:45	Coffee break	Aula Dini
	10:45- 11:30	VICTOR, jean-marc "Some polymer physics tools for chromosome image analysis"	Aula Dini
	11:30- 12:15	Barbi, Maria "Drosophila Epigenetic Domains at the Crossover of Polymer Coil-Globule Transition"	Aula Dini
	12:15- 13:00	Spakowitz, Andrew "Theoretical Modeling of the Spreading of Epigenetic Marks and Chromosomal Organization"	Aula Dini
	14:30- 15:15	Jost, Daniel "Epigenome Folding: A Main Driver of 3D Chromatin Organization"	Aula Dini
	15:15- 15:45	Coffee break	Aula Dini
	15:45- 16:30	Arneodo, Alain "Evidence of Selection for a ``Critical’’ Nucleosomal Array across Vertebrates"	Aula Dini
	16:30- 17:15	Holcman, David "Polymer models for nuclear organization and function"	Aula Dini
Tue 23 Oct	9:30- 10:15	Kaplan, Noam "Explicit Probabilistic Models of the 3D Genome"	Aula Dini
	10:15- 10:45	Coffee break	Aula Dini
	10:45- 11:30	Everaers, Ralf "Statistical Physics of Chromosomr Crampling"	Aula Dini
	11:30- 12:15	Cheblal, Anais "Histone Density and Double Strand Break Mobility: Factors Controlling Mobility and Accessibility During Homology Search"	Aula Dini
	12:15- 13:00	Dubrana, Karine "Saccharomyces Cerevisiae Chromosome Ends are Highly Mobile and Behave as Free Polymer Extremities"	Aula Dini
	14:30- 15:15	Morozov, Alexandre "The role of Mediator in higher-order chromatin structure"	Aula Dini
	15:15- 15:45	Coffee break	Aula Dini
	15:45- 16:30	Shukron, Ofir "Multi-scale Chromatin Organization and Dynamic Revealed by Randomly Cross-linked Polymer Models"	Aula Dini
	16:30- 17:15	Seeber, Andrew "Chromosome Dynamics in Response to DNA Damage"	Aula Dini
Wed 24 Oct	9:00- 9:45	Nicodemi, Mario "Polymer Physics Predicts the Effects on Chromatin Architecture of Disease Associated Structural Variants"	Aula Dini
	9:45- 10:30	Cosentino-Lagomarsino, Marco "Bacterial chromosomes: specific behavior and general lessons"	Aula Dini
	10:30- 11:00	Coffee break	Aula Dini
	11:00- 11:45	Bystricky, Kerstin "Insights from Real Time Imaging of DNA Dynamics in Human Cells"	Aula Dini
	11:45- 12:30	Audit, Benjamin "Emergence of the Spatio-Temporal Replication Program: Role of Origin Distribution Heterogeneity and 3D Chromatin Structure"	Aula Dini
	12:30- 13:15	Amitai, Assaf "Diffusion of nuclear proteins and its link to 3d chromatin organization"	Aula Dini
Thu 25 Oct	9:30- 10:15	Marenduzzo, Davide "Biophysical principles of chromosome organisation: bridging-induced attaraction and diffusive loop extrusion"	Aula Dini
	10:15- 10:45	Coffee break	Aula Dini
	10:45- 11:30	Di Stefano, Marco "Exploring the Time-Dependent Structural Rearrangements of Reprogramming Loci in Mouse using the TADdyn Tool"	Aula Dini
	11:30- 12:15	Tamm, Mikhail "Gaussian Network Approach to the Description of Topological Constraints in the Chromatin"	Aula Dini
	12:15- 13:00	Ferrari, Francesco "Extracting Information on Multiscale Chromatin Organization from Hi-C Data"	Aula Dini
	14:30- 15:15	Fudenberg, Geoffrey "Formation of a Meiotic Loop Array via Extrusion in S. Cerevisiae"	Aula Dini
	15:15- 15:45	Coffee break	Aula Dini
	15:45- 16:30	Junier, Ivan "Functional Insight into the Hierarchical Structuring of Bacterial Chromosomes"	Aula Dini
	16:30- 17:15	Rosa, Angelo ""Chromosomes-Inspired" Polymer Physics"	Aula Dini
Fri 26 Oct	9:30- 10:15	Dudko, Olga "On the Border of Order: Orchestration of Remote Genomic Interactions in Space and Time"	Aula Dini
	10:15- 10:45	Coffee break	Aula Dini
	10:45- 11:30	Wedemann, Gero "Effects of changes of nucleosome positioning and internucleosomal interactions on small and large chromatin chains"	Aula Dini
	11:30- 12:15	Laue, Ernest D. "Single-Cell Hi-C and Single-Molecule Imaging to Study Nuclear Architecture"	Aula Dini
	12:15- 12:30	Concluding remarks	Aula Dini