Reverse mathematical methods for reconstructing molecular dynamics in single cell

Partially supported by the Biophysical Society

15 October 2018 - 19 October 2018

Timetable

Date	Time	Speaker	Room
Mon 15 Oct	8:30- 9:00	Registration	Aula Dini
	9:00- 9:15	Introductory Remarks	Aula Dini
	9:15- 10:15	Peterman, Erwin "A single-molecule view on intracellular transport in vitro and in vivo"	Aula Dini
	10:15- 11:00	Koslover, Elena "Drift, Wander, or Stick: Disentangling Modes of Organelle Motion in Living Cells"	Aula Dini
	11:00- 11:30	Coffee break	Aula Dini
	11:30- 12:15	Betterton, Meredith "Modeling spindle assembly and chromosome alignment in mitosis"	Aula Dini
	12:15- 13:00	Evans, Martin "Antimicrobial resistance: modelling the efficacy of antibiotic treatment"	Aula Dini
	13:00- 14:00	Lunch break	Scuola Normale Self Service
	14:00- 14:30	Coffee break	Aula Dini
	14:30- 15:15	Sullivan, Devin "Proteome-scale cell cycle dependent dynamics from asynchronous fluorescent microscopy images"	Aula Dini
	15:15- 16:00	Murphy, Robert "Integrating Information from Diverse Microscope Images: Learning and Using Generative Models of Cell Organization"	Aula Dini
Tue 16 Oct	8:45- 9:45	Holcman, David "Single Particle Tracking techniques"	Aula Dini
	9:45- 10:30	Avezov, Edward "Single particle tracking reveals nanofluidic properties of the Endoplasmic Reticulum"	Aula Dini
	10:30- 10:45	Coffee break	Aula Dini
	10:45- 11:30	Parutto, Pierre "Characterization of the dynamics of the endoplasmic reticulum luminal protein calreticulin and the CaV2.1 calcium channels at synapses."	Aula Dini
	11:30- 12:15	Kervrann, Charles "Computational methods for fluorescence microscopy and intracellular dynamics analysis"	Aula Dini
	12:15- 13:00	Dao Duc, Khanh "Evolution and function of the ribosome exit tunnel"	Aula Dini
	13:00- 14:00	Lunch break	Scuola Normale Self Service
	14:00- 14:30	Coffee break	Aula Dini
	14:30- 15:15	Huber, Gregory "Topological Structures in the Endoplasmic Reticulum: Structure, Function and Formation"	Aula Dini
	15:15- 16:00	Coombs, Daniel "Multistate modelling and parameter inference for particle tracking analysis and super-resolution imaging of immune cell surface receptors"	Aula Dini
	16:00- 16:30	Lu, Meng "Direct in-cell observation of structural progression of amyloid-β Arctic mutant aggregation"	Aula Dini
Wed 17 Oct	9:00- 9:45	Vestergaard, Christian "Mapping spatio-temporal dynamics of single biomolecules at the whole-cell scale"	Aula Dini
	9:45- 10:30	Amitai, Assaf "Diffusion of nuclear proteins and its link to 3d chromatin organization"	Aula Dini
	10:30- 10:45	Coffee break	Aula Dini
	10:45- 11:30	Pressé, Steve "Novel Statistical Tools for Single Molecule Imaging: A foray into Bayesian Nonparametrics"	Aula Dini
	11:30- 12:15	Sonneveld, Stijn "Single molecule imaging of mRNA translation regulation in living cells"	Aula Dini
	12:15- 13:00	Lerner, Eitan "Solving structures of highly dynamic highly heterogeneous conformations of the bacterial transcription initiation complex"	Aula Dini
	13:00- 14:00	Lunch break	Scuola Normale Self Service
	19:30- 21:00	Workshop Dinner
Thu 18 Oct	8:45- 9:45	Erdmann-Pham, Dan "Hydrodynamic Limit of the inhomogeneous l-TASEP with open boundaries"	Aula Dini
	9:45- 10:30	Ciandrini, Luca "Ribosome economics"	Aula Dini
	10:30- 10:45	Coffee break	Aula Dini
	10:45- 11:30	Tuller, Tamir "Modeling and analyzing the flow of molecular machines in gene expression"	Aula Dini
	11:30- 12:15	Chubb, Jonathan "Origins and implications of transcription bursts"	Aula Dini
	12:15- 13:00	Yvinec, Romain "Stochastic single gene expression model: analytical results on bursting models"	Aula Dini
	13:00- 14:00	Lunch break	Scuola Normale Self Service
	14:00- 14:30	Coffee break	Aula Dini
	14:30- 15:15	Kulkarni, Rahul "Modeling fluctuations and large deviations in stochastic gene expression"	Aula Dini
	15:15- 16:00	Carja, Oana "Evolution under uncertainty: an adaptive role of stochastic phenotypic variation"	Aula Dini
	16:00- 16:20	Cardim Falcão , Rebeca "Multi-state Diffusion Analysis with Measurement Errors"	Aula Dini
Fri 19 Oct	8:30- 9:15	Choubey, Sandeep "Decoding the mechanism of transcriptional regulation from nascent RNA measurements"	Aula Dini
	9:15- 10:00	Szavits-Nossan, Juan "Mathematical modelling of mRNA translation: old questions and new insights"	Aula Dini
	10:00- 10:30	Coffee break	Aula Dini