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Multiscale analysis and reconstruction of chromatin and nuclear organization
22 October 2018 - 26 October 2018
Aims and Research Directions
Organizing Committee
List of Participants
Invited Speakers
Timetable
Financial Support
Registration
Documents
Timetable
Weeks:
[
Mon 22 Oct - Fri 26 Oct
]
Date
Time
Speaker
Room
Mon 22 Oct
8:30- 9:30
Registration
Aula Dini
9:30- 10:15
Garini, Yuval
"Chromatin matrix – possible nuclear functional structure"
Aula Dini
10:15- 10:45
Coffee break
Aula Dini
10:45- 11:30
VICTOR, jean-marc
"Some polymer physics tools for chromosome image analysis"
Aula Dini
11:30- 12:15
Barbi, Maria
"Drosophila Epigenetic Domains at the Crossover of Polymer Coil-Globule Transition"
Aula Dini
12:15- 13:00
Spakowitz, Andrew
"Theoretical Modeling of the Spreading of Epigenetic Marks and Chromosomal Organization"
Aula Dini
14:30- 15:15
Jost, Daniel
"Epigenome Folding: A Main Driver of 3D Chromatin Organization"
Aula Dini
15:15- 15:45
Coffee break
Aula Dini
15:45- 16:30
Arneodo, Alain
"Evidence of Selection for a ``Critical’’ Nucleosomal Array across Vertebrates"
Aula Dini
16:30- 17:15
Holcman, David
"Polymer models for nuclear organization and function"
Aula Dini
Tue 23 Oct
9:30- 10:15
Kaplan, Noam
"Explicit Probabilistic Models of the 3D Genome"
Aula Dini
10:15- 10:45
Coffee break
Aula Dini
10:45- 11:30
Everaers, Ralf
"Statistical Physics of Chromosomr Crampling"
Aula Dini
11:30- 12:15
Cheblal, Anais
"Histone Density and Double Strand Break Mobility: Factors Controlling Mobility and Accessibility During Homology Search"
Aula Dini
12:15- 13:00
Dubrana, Karine
"Saccharomyces Cerevisiae Chromosome Ends are Highly Mobile and Behave as Free Polymer Extremities"
Aula Dini
14:30- 15:15
Morozov, Alexandre
"The role of Mediator in higher-order chromatin structure"
Aula Dini
15:15- 15:45
Coffee break
Aula Dini
15:45- 16:30
Shukron, Ofir
"Multi-scale Chromatin Organization and Dynamic Revealed by Randomly Cross-linked Polymer Models"
Aula Dini
16:30- 17:15
Seeber, Andrew
"Chromosome Dynamics in Response to DNA Damage"
Aula Dini
Wed 24 Oct
9:00- 9:45
Nicodemi, Mario
"Polymer Physics Predicts the Effects on Chromatin Architecture of Disease Associated Structural Variants"
Aula Dini
9:45- 10:30
Cosentino-Lagomarsino, Marco
"Bacterial chromosomes: specific behavior and general lessons"
Aula Dini
10:30- 11:00
Coffee break
Aula Dini
11:00- 11:45
Bystricky, Kerstin
"Insights from Real Time Imaging of DNA Dynamics in Human Cells"
Aula Dini
11:45- 12:30
Audit, Benjamin
"Emergence of the Spatio-Temporal Replication Program: Role of Origin Distribution Heterogeneity and 3D Chromatin Structure"
Aula Dini
12:30- 13:15
Amitai, Assaf
"Diffusion of nuclear proteins and its link to 3d chromatin organization"
Aula Dini
Thu 25 Oct
9:30- 10:15
Marenduzzo, Davide
"Biophysical principles of chromosome organisation: bridging-induced attaraction and diffusive loop extrusion"
Aula Dini
10:15- 10:45
Coffee break
Aula Dini
10:45- 11:30
Di Stefano, Marco
"Exploring the Time-Dependent Structural Rearrangements of Reprogramming Loci in Mouse using the TADdyn Tool"
Aula Dini
11:30- 12:15
Tamm, Mikhail
"Gaussian Network Approach to the Description of Topological Constraints in the Chromatin"
Aula Dini
12:15- 13:00
Ferrari, Francesco
"Extracting Information on Multiscale Chromatin Organization from Hi-C Data"
Aula Dini
14:30- 15:15
Fudenberg, Geoffrey
"Formation of a Meiotic Loop Array via Extrusion in S. Cerevisiae"
Aula Dini
15:15- 15:45
Coffee break
Aula Dini
15:45- 16:30
Junier, Ivan
"Functional Insight into the Hierarchical Structuring of Bacterial Chromosomes"
Aula Dini
16:30- 17:15
Rosa, Angelo
""Chromosomes-Inspired" Polymer Physics"
Aula Dini
Fri 26 Oct
9:30- 10:15
Dudko, Olga
"On the Border of Order: Orchestration of Remote Genomic Interactions in Space and Time"
Aula Dini
10:15- 10:45
Coffee break
Aula Dini
10:45- 11:30
Wedemann, Gero
"Effects of changes of nucleosome positioning and internucleosomal interactions on small and large chromatin chains"
Aula Dini
11:30- 12:15
Laue, Ernest D.
"Single-Cell Hi-C and Single-Molecule Imaging to Study Nuclear Architecture"
Aula Dini
12:15- 12:30
Concluding remarks
Aula Dini
