CRM: Centro De Giorgi
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Reverse mathematical methods for reconstructing molecular dynamics in single cell

Partially supported by the Biophysical Society

15 October 2018 - 19 October 2018

Timetable

Date Time Speaker Room
Mon 15 Oct 8:30- 9:00 Registration Aula Dini
9:00- 9:15 Introductory Remarks Aula Dini
9:15- 10:15 Peterman, Erwin
"A single-molecule view on intracellular transport in vitro and in vivo"
Aula Dini
10:15- 11:00 Koslover, Elena
"Drift, Wander, or Stick: Disentangling Modes of Organelle Motion in Living Cells"
Aula Dini
11:00- 11:30 Coffee break Aula Dini
11:30- 12:15 Betterton, Meredith
"Modeling spindle assembly and chromosome alignment in mitosis"
Aula Dini
12:15- 13:00 Evans, Martin
"Antimicrobial resistance: modelling the efficacy of antibiotic treatment"
Aula Dini
13:00- 14:00 Lunch break Scuola Normale Self Service
14:00- 14:30 Coffee break Aula Dini
14:30- 15:15 Sullivan, Devin
"Proteome-scale cell cycle dependent dynamics from asynchronous fluorescent microscopy images"
Aula Dini
15:15- 16:00 Murphy, Robert
"Integrating Information from Diverse Microscope Images: Learning and Using Generative Models of Cell Organization"
Aula Dini
Tue 16 Oct 8:45- 9:45 Holcman, David
"Single Particle Tracking techniques"
Aula Dini
9:45- 10:30 Avezov, Edward
"Single particle tracking reveals nanofluidic properties of the Endoplasmic Reticulum"
Aula Dini
10:30- 10:45 Coffee break Aula Dini
10:45- 11:30 Parutto, Pierre
"Characterization of the dynamics of the endoplasmic reticulum luminal protein calreticulin and the CaV2.1 calcium channels at synapses."
Aula Dini
11:30- 12:15 Kervrann, Charles
"Computational methods for fluorescence microscopy and intracellular dynamics analysis"
Aula Dini
12:15- 13:00 Gandrillon, Olivier
"A probabilistic view on GRN inference from single cell data"
Aula Dini
13:00- 14:00 Lunch break Scuola Normale Self Service
14:00- 14:30 Coffee break Aula Dini
14:30- 15:15 Huber, Gregory
"Topological Structures in the Endoplasmic Reticulum: Structure, Function and Formation"
Aula Dini
15:15- 16:00 Coombs, Daniel
"Multistate modelling and parameter inference for particle tracking analysis and super-resolution imaging of immune cell surface receptors"
Aula Dini
Wed 17 Oct 9:00- 9:45 Vestergaard, Christian
"Mapping spatio-temporal dynamics of single biomolecules at the whole-cell scale"
Aula Dini
9:45- 10:30 Amitai, Assaf
"Diffusion of nuclear proteins and its link to 3d chromatin organization"
Aula Dini
10:30- 10:45 Coffee break Aula Dini
10:45- 11:30 Pressé, Steve
"Novel Statistical Tools for Single Molecule Imaging: A foray into Bayesian Nonparametrics"
Aula Dini
11:30- 12:15 Sonneveld, Stijn
"Single molecule imaging of mRNA translation regulation in living cells"
Aula Dini
12:15- 13:00 Lerner, Eitan
"Solving structures of highly dynamic highly heterogeneous conformations of the bacterial transcription initiation complex"
Aula Dini
13:00- 14:00 Lunch break Scuola Normale Self Service
14:00- 14:30 Coffee break Aula Dini
14:30- 15:15 Dao Duc, Khanh
"Evolution and function of the ribosome exit tunnel"
Aula Dini
15:15- 15:35 Cardim Falcão , Rebeca
"Multi-state Diffusion Analysis with Measurement Errors"
Aula Dini
15:35- 16:05 Lu, Meng
"Direct in-cell observation of structural progression of amyloid-β Arctic mutant aggregation"
Aula Dini
19:30- 21:00 Workshop Dinner
Thu 18 Oct 8:45- 9:45 Erdmann-Pham, Dan
"Hydrodynamic Limit of the inhomogeneous l-TASEP with open boundaries"
Aula Dini
9:45- 10:30 Ciandrini, Luca
"Ribosome economics"
Aula Dini
10:30- 10:45 Coffee break Aula Dini
10:45- 11:30 Tuller, Tamir
"Modeling and analyzing the flow of molecular machines in gene expression"
Aula Dini
11:30- 12:15 Chubb, Jonathan
"Origins and implications of transcription bursts"
Aula Dini
12:15- 13:00 Yvinec, Romain
"Stochastic single gene expression model: analytical results on bursting models"
Aula Dini
13:00- 14:00 Lunch break Scuola Normale Self Service
14:00- 14:30 Coffee break Aula Dini
14:30- 15:15 Kulkarni, Rahul
"Modeling fluctuations and large deviations in stochastic gene expression"
Aula Dini
15:15- 16:00 Carja, Oana
"Evolution under uncertainty: an adaptive role of stochastic phenotypic variation"
Aula Dini
Fri 19 Oct 9:00- 9:45 Levine, Erel
"TBD"
Aula Dini
9:45- 10:30 Choubey, Sandeep
"Decoding the mechanism of transcriptional regulation from nascent RNA measurements"
Aula Dini
10:30- 10:45 Coffee break Aula Dini
10:45- 11:30 Szavits-Nossan, Juan
"Mathematical modelling of mRNA translation: old questions and new insights"
Aula Dini